FastQCFastQC Report
Tue 7 May 2024
EGAF00002876756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56790
Total Bases3.7 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC33

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA723212.734636379644304No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2720.4789575629512238No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1100.19369607325233318No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA580.10213065680577567No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)