FastQCFastQC Report
Wed 8 May 2024
EGAF00002876772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175416
Total Bases11.5 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA64463.674693300497104No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11810.6732567154649519No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC4860.27705568477219866No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGCGAG2460.14023806266247094No Hit
TTCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGG2260.12883659415332693No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)