FastQCFastQC Report
Tue 7 May 2024
EGAF00002876789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11497
Total Bases758.8 kbp
Sequences flagged as poor quality0
Sequence length66
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA123010.698443072105766No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG430.37401061146386017No Hit
GTATATGTATTTTTTTAAGTGACCTCCTCTCCTTCCACAGACCCCACATG190.16526050273984516No Hit
GATTTAGAGATTATTATTTTTCAGTGTGCACCTACTGTTTGTATTTGCAA170.14786466034617726No Hit
CCTATATACTTTTCCAAAAAGAGGTGGAGAGAATATTTATTGACTTAGGT160.1391667391493433No Hit
GTTATTATGTTAGTAGATCAAAGGAGAAAAAACTATCTGGTTAGTTGTCA160.1391667391493433No Hit
CTTTAAGGATGGTTTAGAAATGGAAAAATGTTAACAAATGTGGCAATTAT150.13046881795250936No Hit
ATATAGATGTGTACAGTATATGTATTTTTTTAAGTGACCTCCTCTCCTTC130.11307297555884144No Hit
ATATATGATTTTCTTTAAGGATGGTTTAGAAATGGAAAAATGTTAACAAA130.11307297555884144No Hit
GATAAAACTTAAGGGCTTAGAAGAGACCAGGGACCTGGAAGAGAAGTTGA120.10437505436200747No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC120.10437505436200747No Hit
CTTCAAATACAGTGTGTAGTTGAAGATGATAAAGTTGGAACAGATATGCT120.10437505436200747No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)