FastQCFastQC Report
Wed 8 May 2024
EGAF00002876792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences900653
Total Bases59.4 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65370.7258067202352071No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA62370.6924975545520861No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC20520.22783469327254782No Hit
TTCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGG11670.1295726545073408No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGCGAG9920.11014230785885352No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)