FastQCFastQC Report
Wed 8 May 2024
EGAF00002876806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences354507
Total Bases25.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30180.8513231050444702No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17850.5035161505978726No Hit
CATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACC3740.10549862203003044No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)