FastQCFastQC Report
Wed 8 May 2024
EGAF00002876808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502355
Total Bases35.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA39680.7898796667695156No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33790.6726319037334156No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC6020.11983557444436703No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)