FastQCFastQC Report
Tue 7 May 2024
EGAF00002876820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13819
Total Bases981.1 kbp
Sequences flagged as poor quality0
Sequence length71
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA183213.257109776394818No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA710.5137853679716332No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG380.2749837180693248No Hit
CTGGAGGACCTGTTGATGCTAGTTCAGAGTATCAGCAAGAGCTGGAGAGG290.20985599536869526No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT280.202619581735292No Hit
CTCCGGACCCAGCATGTAGGTGCCGGGCGACTGCCATGAACTCCGGAGCC250.18091034083508212No Hit
ATTCACAGCCGTGCACGCGCTCAAGCCACCAGGGTGCGAGATGCCAGCTC240.17367392720167885No Hit
ATTCAGATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCGGCC240.17367392720167885No Hit
GTACAAACTTAGAAGAAAATTGGAAGATAGAAACAAGATAGAAAATGAAA230.16643751356827557No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA220.15920109993487228No Hit
GTTCATTATAATCTCAAAGGAGAAAAAAAACCTTGTAAAAAAAGCAAAAA210.151964686301469No Hit
GTGTTACCATGGCAAAACTGGAAGAGTCTACAATGTTACCCAGCATGCTG200.1447282726680657No Hit
GTATTATATAACATATCTTGAGCATTCTTGACAGACTCCTGGCTGTCAGT190.1374918590346624No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC190.1374918590346624No Hit
ATACAGGCAAGAAGACAAAAAGGAGAGAAAATGTACCTCTTCTACTGGAA180.13025544540125913No Hit
GGCAGATACCGTTAAGCGCTGTGCTACCGGGCCCCAGGCCCAGCCACCCG180.13025544540125913No Hit
GTAAATTGAGATTTAATTCCCAAATGTATTCTACTTGTTCTAAAACAATC180.13025544540125913No Hit
GTGCAGGTACCATCAGGAAGCAGCGGGATAAGCTGATAAAGGAAGGAAAG180.13025544540125913No Hit
CATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCAC180.13025544540125913No Hit
GTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGT180.13025544540125913No Hit
GTAATTGAAAGACGTCATCACTGAAAGACAGAATGCCATCTGGGCATACA180.13025544540125913No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG170.12301903176785585No Hit
GTGCCACCTGGTGTCGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAAC170.12301903176785585No Hit
GGCCCGGTGCACCATGCATTGCAATGACAAAGCCAAAGATTCAATAGATG170.12301903176785585No Hit
ACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATT170.12301903176785585No Hit
CCTTCGTCGAGAGTGCCCTTCTGATGAATGTGGTGCTGGGGTGTTTATGG170.12301903176785585No Hit
CTGTATGTATCAATAGTTTATTCTTTTTAACTGTTGAGTATTCCATGGTA170.12301903176785585No Hit
CCTAAAAATTGTATACCGCAGATTCAGGCATGGATTCCGTGAAGGAACAA170.12301903176785585No Hit
TCCCTGGATTATGCAAAGAAAAATGAACCCAAACATAGACTTGCAAGACA170.12301903176785585No Hit
GAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTAAAGCGCC170.12301903176785585No Hit
CCTCAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTGGCAGCTGC170.12301903176785585No Hit
CCATGATGGACGATCTTGCTCCCAGGACCTGCCTCTTCCCAGGCTTCCTG170.12301903176785585No Hit
GGTTTAATAGAAATCCTTAAAAAAGTAAGCCAACAAACAGAAAAGACAAC170.12301903176785585No Hit
TGTCTACTGAGTAGCCTCCTCAGATTCATTGAACTAGGTCTGTCCCAATG160.11578261813445256No Hit
GTCCAACAAAGTCCACCAATATGATGGGTCACCGGGTTGATTATTTTATT160.11578261813445256No Hit
CTGCAGTCTCAACCTTCTGGGCTCAAGTGATCTTCTTTTCTCAGTCTCTG160.11578261813445256No Hit
TATTGAAACGGTGTGAAGACGGATTCTTTGGTTGATAAATTGCTATCATT160.11578261813445256No Hit
CCTGATGTTTTAGAAGTGTATAGTTTAATTTTCAATTATATGTGTTTTCT160.11578261813445256No Hit
CTATCATTCTAAAGTCATGGACTTCACTTTCGGCAACAAAACTAAATAAG160.11578261813445256No Hit
GTGACACCCCTGCCCATTTTCTGTCTTTAATTAACCAAGGTGTTAGGTGT160.11578261813445256No Hit
GTCCTCGTCCTTGGCATTTTCACTGTTCTGTACAAGGCTGCTTGTTTTTT150.10854620450104929No Hit
ACAGAGGGAAATTACTGTTACTGTGTCAAATATGTGACTGATGCTTTTGG150.10854620450104929No Hit
AGCTGGGTGAGATGTGGAATAATTTAAATGACAGTGAAAAGCAGCCTTAC150.10854620450104929No Hit
GCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGA150.10854620450104929No Hit
GACTTGAAACAGTTCTGTCTGCAGAATGCTCAACATGACCCTCTGCTGAC150.10854620450104929No Hit
AGAAAAAGACCTCAAGAAAGCAACGAAAGGAACGCAAGAACAGAATGAAG150.10854620450104929No Hit
CTATGAACCACTGGAGCAGCCCACACTGGCTTGATGGATCACCCCCAGGA140.101309790867646No Hit
ATCCAAAGAAGCAAACAATAGGTAATTCTTGTAAAGCCTGTGGCTATCGA140.101309790867646No Hit
GAAGTACAAGCCCCTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCC140.101309790867646No Hit
GGTGGGACGACAGTGAAATCTAGAGTAAAACCAAGCTGGCCCAAGGTGTC140.101309790867646No Hit
CAGTTCACAGAGGTCTTTCAGCTCATTTAATCCCAGGAAAGAGGCATCAA140.101309790867646No Hit
CTGTAAATGTATTCATTCTTAATTTATGTAAGGTTTTTTTTGTACGCAAT140.101309790867646No Hit
GTGCTGCAGCTTTGTGCCGTGGGACTGCTGGCCTCGCCGACCTCTTGCTT140.101309790867646No Hit
GTTTTTGTGGGTGTGAAACAAATGGTGAGAATTTGAATTGGTCCCTCCTA140.101309790867646No Hit
GAACTGTCCTTTCTGCGCTCAAATTTTTCGAGTGTGCCTTTTTATTCATC140.101309790867646No Hit
AGCCCCTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTC140.101309790867646No Hit
GCATTATTGAGCCTTCTCTCCGCCAGCTTGCCCAGAAATACAACTGCGAC140.101309790867646No Hit
GGTTCCTGCTCTCCCATCCACCTGTCTGTCCTGGCCTAATGCCAGGCTCT140.101309790867646No Hit
GTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGT140.101309790867646No Hit
CCGTGAAGACCTGGAGCGACTGAAGAAGATTCGGGCCCATAGAGGGCTGC140.101309790867646No Hit
CAGTTAGCCCTGGGACCCTCCAGAGAGGGTTTCTACTCTGCTCCCTAGTC140.101309790867646No Hit
GTATTTATCTGGAGACCGGGTCTCACTCTGTCACCCAGGCTGTAGTGCAG140.101309790867646No Hit
TCTTGGAACATACTTTTTGCAGAGGTCTGCAAAGCAGTCTGTAAAATTTC140.101309790867646No Hit
TTCTTGAACAGACAGAAGGATGTAAAGGATGGAAAATACAGCCAGGTCCT140.101309790867646No Hit
CTAATAAGAGGACGAATCTTCTTTAAGATTTGGCCTCTGAGTGATTTTGG140.101309790867646No Hit
TTCTAACCTGAATCGGAGGACAACCAGTAGGCTACCCTTTTACCATCATT140.101309790867646No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)