FastQCFastQC Report
Tue 7 May 2024
EGAF00002876841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24694
Total Bases1.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4421.7899084797926623No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG860.3482627358872601No Hit
ATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCA660.2672714019599903No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTC450.182230501336357No Hit
GTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTG370.14983396776544908No Hit
GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCT350.1417348343727221No Hit
ATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT330.13363570097999514No Hit
TCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTT330.13363570097999514No Hit
CGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAA320.12958613428363167No Hit
GTTTAAAATCTGCCTCGCGGGATGTTACTAAACTCGCTAATAGTTTAAAG300.12148700089090467No Hit
GATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTT290.11743743419454118No Hit
GCATCTGATTACCTTGAATTGGATACAATTAAAAATCTCGTCAAAAAATA270.1093383008018142No Hit
TTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCA270.1093383008018142No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA250.10123916740908721No Hit
GTATCAAGCAAAAGCTTACCAAGCAAGAGGAAGAAAAACAAATCCTGAAA250.10123916740908721No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)