FastQCFastQC Report
Tue 7 May 2024
EGAF00002876842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40295
Total Bases2.8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11302.804318153617074No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1750.43429705918848494No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA970.2407246556644745No Hit
CGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAA430.10671299168631344No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)