FastQCFastQC Report
Wed 8 May 2024
EGAF00002876854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113638
Total Bases8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18491.6270965698093949No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2800.24639645189109277No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA2070.18215737693377215No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1620.1425579471655608No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG1330.11703831464826907No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG1260.11087840335099175No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)