FastQCFastQC Report
Tue 7 May 2024
EGAF00002876862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45789
Total Bases3.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7431.6226604643036535No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1780.38873965362860075No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT1590.3472449714997052No Hit
CTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAG1580.34506104086134226No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG1530.3341413876695276No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA890.19436982681430037No Hit
GCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAG730.15942693660049356No Hit
GGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGC670.14632335277031602No Hit
AGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAG600.13103583830177554No Hit
GTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAA540.11793225447159798No Hit
GATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTT540.11793225447159798No Hit
ACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACAT520.11356439319487213No Hit
GCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCG510.1113804625565092No Hit
ATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTT500.10919653191814628No Hit
GTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCT470.10264474000305751No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)