FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002876864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26711
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8153.051177417543334No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG890.333196061547677No Hit
GTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAACGTCAACATTGGGAGCCTC550.2059076784845195No Hit
ACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGT340.1272883830631575No Hit
GCCCTGGACCTGTGACATTCTGGACTATTTCTGTGTTTATTTGTGGCCGAGTGTAACAACCATATAATAAA320.11980083111826588No Hit
GTCTCTTGGTTGCACCAGCCACATTTCAGATGCTCAATAGCCACATGTGGCTAGTGGGTACCATATTGGAC300.11231327917337426No Hit
GGGCATTCTCTGTACTAGTTTGTCGTGGTTATAAAACAATTAGCAGAATAGCCTACATTTGTATTTATTTT300.11231327917337426No Hit
GTACTTTTCCTGGGAGGGGGCCTTCCAGCATGTGGGCAAAGCCTTCAATCAGGGCAAGATCTTCAAGTGAA280.10482572722848266No Hit
GGCCCTGGCCAACGTCAACATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTG270.10108195125603683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)