FastQCFastQC Report
Wed 8 May 2024
EGAF00002876888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences189007
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24821.3131788769728105No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9330.4936325109652024No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA5620.29734348463284427No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA3780.19999259286693086No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCAT3740.19787626913288925No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC2870.15184622791748453No Hit
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCA2070.10951975323665261No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)