FastQCFastQC Report
Wed 8 May 2024
EGAF00002876890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516487
Total Bases36.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53261.0311973002224644No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA18450.3572209949137152No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13320.2578961329133163No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT7050.13649907935727326No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC6750.13069060789526163No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)