FastQCFastQC Report
Wed 8 May 2024
EGAF00002876919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1476124
Total Bases104.8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG141660.9596754744181384No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA105060.7117288249496655No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA38340.2597342770661543No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC29400.19917025940910113No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA17310.11726657110107282No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG16930.11469226162571708No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC15240.10324335895900345No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)