FastQCFastQC Report
Wed 8 May 2024
EGAF00002876939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1385027
Total Bases98.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG152761.1029387874749013No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA104560.7549311313064655No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC25740.18584475248496962No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24790.17898568042355853No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT17590.12700113427391668No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG17020.12288569103707005No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC15510.11198337649735349No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA14150.10216407333575447No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)