FastQCFastQC Report
Wed 8 May 2024
EGAF00002876940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1080670
Total Bases76.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG106470.9852221307152045No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA78600.7273265659266936No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24030.22236205317071817No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC17270.15980826709356233No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT13040.1206658832020876No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC12120.11215264604365811No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG11980.11085715343259275No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA11250.10410208481775195No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)