FastQCFastQC Report
Wed 8 May 2024
EGAF00002876961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences776314
Total Bases55.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG83251.0723753532720008No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA41560.5353503865703826No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17970.23147849967925352No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC9740.12546469598641788No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT8170.1052409205553423No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)