FastQCFastQC Report
Wed 8 May 2024
EGAF00002876986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1497097
Total Bases106.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA83850.5600839491362283No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA61340.4097262902804561No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32560.2174875776252307No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC16200.10820942130002265No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG15440.10313292993039194No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)