FastQCFastQC Report
Wed 8 May 2024
EGAF00002876995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1259002
Total Bases89.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA81600.6481324096387456No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32910.26139751962268526No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26110.20738648548612312No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG19780.15710856694429398No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC15970.12684650222954372No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT14230.113026031729894No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)