FastQCFastQC Report
Wed 8 May 2024
EGAF00002876996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences778591
Total Bases55.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA59430.7633019133280503No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC16100.20678379277438347No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15830.20331599003841552No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG15200.19522445032115707No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13600.17467450818208788No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT10470.13447368387253386No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC9950.12779495267733637No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)