FastQCFastQC Report
Wed 8 May 2024
EGAF00002877029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences239820
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28191.1754649320323576No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA4750.19806521557835044No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4690.19556333917104496No Hit
GTCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAG3750.15636727545659243No Hit
GTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAA2810.11717121174213993No Hit
CTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACC2790.11633725293970479No Hit
GAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGGTCCA2630.10966558252022351No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG2490.10382787090317737No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)