FastQCFastQC Report
Wed 8 May 2024
EGAF00002877047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429921
Total Bases30.5 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53871.253020903840473No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA15450.3593683490687824No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14940.34750570453641483No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC10380.24143970636465772No Hit
GTAATAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTC6520.15165576931575803No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT6250.14537554573979872No Hit
GCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTCTTAACTATCCTAAC5410.12583707239236977No Hit
GCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGAAATAAAGCTTT4390.10211178332763461No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)