FastQCFastQC Report
Wed 8 May 2024
EGAF00002877112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences818453
Total Bases58.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG83791.0237606802101036No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA48520.5928257334263544No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30630.37424262602739555No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA13780.1683664181083092No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC11000.13439989834480418No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA10730.13110099174906806No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)