FastQCFastQC Report
Wed 8 May 2024
EGAF00002877154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103861
Total Bases7.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11321.08991825613079No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3230.31099257661682445No Hit
CAATAATAGTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT1120.10783643523555521Illumina Single End PCR Primer 1 (100% over 39bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)