FastQCFastQC Report
Wed 8 May 2024
EGAF00002877167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences746878
Total Bases53 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28510.38172231609446255No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12310.16481942164583774No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC7640.10229247614737613No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)