FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82871
Sequences flagged as poor quality0
Sequence length71
%GC45

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2080.2509925064256495No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1810.2184117483800123No Hit
CCTTAAGCCAAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAA1170.14118328486442783Illumina Single End PCR Primer 1 (100% over 58bp)
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGC1070.12911633744011777No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)