FastQCFastQC Report
Wed 8 May 2024
EGAF00002877179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1071196
Total Bases76 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTGTACATGGCCTTTCTGGAATACATGGCAGATCGGGAATACCTGCC48600.4536984828173368No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA35570.3320587455517011No Hit
CTGGAATACATGGCAGATCGGGAATACCTGCCAATTCCTCTGACAAGGAC32220.3007852904603826No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29610.27642000156834046No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA27500.2567223925406742No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA25670.2396386842370584No Hit
GTACATGGCCTTTCTGGAATACATGGCAGATCGGGAATACCTGCCAATTC21650.20211053812747623No Hit
GACAAGGACAGGGTTGCGGCTGCAATGGGGCTTCCCCTTCTTGGGCTTTT20170.18829420572892355No Hit
GGACAGGGTTGCGGCTGCAATGGGGCTTCCCCTTCTTGGGCTTTTTAGCT19250.1797056747784719No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC17770.16588934237991926No Hit
ATACATGGCAGATCGGGAATACCTGCCAATTCCTCTGACAAGGACAGGGT15810.14759203731156575No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT15200.14189746787702717No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCAT15000.1400303959312768No Hit
GTACTTCCTCTTGTACATGGCCTTTCTGGAATACATGGCAGATCGGGAAT14240.13293552253742547No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG14220.13274881534285043No Hit
GGATAATATCTAGGCATTTTGCGAAGTTTAACCACCCGGGTACCGCCGTT14080.13144186498082516No Hit
ACCTTGGATTTAGCGGCTGAGTACTTCCTCTTGTACATGGCCTTTCTGGA11770.10987718400740855No Hit
GAGTACTTCCTCTTGTACATGGCCTTTCTGGAATACATGGCAGATCGGGA11400.10642310090777038No Hit
GCAATGGGGCTTCCCCTTCTTGGGCTTTTTAGCTTTGAGGTTACCCTTTT11340.10586297932404526No Hit
TCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACC11140.10399590737829492No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)