FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002877179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1071196
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTGTACATGGCCTTTCTGGAATACATGGCAGATCGGGAATACCTGCCAATTCCTCTGACAAGGACAGG41600.3883509647160744No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA32580.30414601996273327No Hit
CTGGAATACATGGCAGATCGGGAATACCTGCCAATTCCTCTGACAAGGACAGGGTTGCGGCTGCAATGGGG30040.28043420625170373No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26400.2464534968390472No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAA24800.23151692127304432No Hit
GTACATGGCCTTTCTGGAATACATGGCAGATCGGGAATACCTGCCAATTCCTCTGACAAGGACAGGGTTGC19220.17942561398660936No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG18690.17447787333037093No Hit
GACAAGGACAGGGTTGCGGCTGCAATGGGGCTTCCCCTTCTTGGGCTTTTTAGCTTTGAGGTTACCCTTTT16480.15384672832982949No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTC15600.14563161176852787No Hit
ATACATGGCAGATCGGGAATACCTGCCAATTCCTCTGACAAGGACAGGGTTGCGGCTGCAATGGGGCTTCC14850.13863009197196405No Hit
GGACAGGGTTGCGGCTGCAATGGGGCTTCCCCTTCTTGGGCTTTTTAGCTTTGAGGTTACCCTTTTTCACC14530.13564277685876347No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATT13510.12612070993543667No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAAT13470.12574729554628658No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT12270.11454486387178443No Hit
GTACTTCCTCTTGTACATGGCCTTTCTGGAATACATGGCAGATCGGGAATACCTGCCAATTCCTCTGACAA11690.1091303552291084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)