FastQCFastQC Report
Thu 9 May 2024
EGAF00002877192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2489501
Total Bases176.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG204450.82124891695163No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA136150.5468967475811418No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA31810.12777661065410298No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)