FastQCFastQC Report
Wed 8 May 2024
EGAF00002877193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106138
Total Bases7.5 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26642.5099398895777196No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3640.34294974467203077No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1480.13944110497653997No Hit
ACTCTGCACTATAGCCATTTGCCCCAACTTAAGTTTAGAAATTACAAGTT1200.11306035538638376No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)