FastQCFastQC Report
Fri 10 May 2024
EGAF00002877201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7750183
Total Bases550.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG499120.6440105994916507No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA375900.4850208053151777No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA134080.17300236652476464No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC109770.14163536525524623No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)