FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002877222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences750269
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA95121.2678119447824714No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG37500.4998207309644941No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT23950.3192188401759902No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAA19140.2551085010842778No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAAT16090.21445641496583226No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15610.20805870960948675No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTC12790.17047219064095678No Hit
TTATTTTAGTGTGTAAAATTAATGTAATAAAGTGAACTTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA12500.16660691032149802No Hit
TACCATGACATTGGGTGACATTGTCTTCAAGAGAATCAGCAAGAGAATTTAAACAAGTCTGCATTTCATAT11260.1500795048176054No Hit
CACCAATACCATGACATTGGGTGACATTGTCTTCAAGAGAATCAGCAAGAGAATTTAAACAAGTCTGCATT11180.14901322059154784No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATT10760.1434152284047455No Hit
GTCTTCAAGAGAATCAGCAAGAGAATTTAAACAAGTCTGCATTTCATATTATTTTAGTGTGTAAAATTAAT10030.13368538484197No Hit
ATTTTAGTGTGTAAAATTAATGTAATAAAGTGAACTTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA9490.1264879663160813No Hit
GTGTAAAATTAATGTAATAAAGTGAACTTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8070.10756142130355913No Hit
TATTTACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7960.10609528049272995No Hit
CTCTAGAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7680.10236328570152839No Hit
CCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCC7570.1008971448906992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)