FastQCFastQC Report
Tue 7 May 2024
EGAF00002877287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13121
Total Bases865.9 kbp
Sequences flagged as poor quality0
Sequence length66
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA161712.32375581129487No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG540.4115539974087341No Hit
CCGTCAGACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG230.1752915174148312Illumina Single End PCR Primer 1 (100% over 41bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA150.11432055483575948No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)