FastQCFastQC Report
Tue 7 May 2024
EGAF00002877290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46846
Total Bases3 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5011.0694616402681125No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2450.5229902232848056No Hit
GGTTGGCGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG580.12380993041028049Illumina Single End PCR Primer 1 (100% over 41bp)
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG550.11740596849250735No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)