FastQCFastQC Report
Wed 8 May 2024
EGAF00002877305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184473
Total Bases12.1 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA83044.501471760094973No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14390.780059954573298No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA3080.1669621028551604No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)