FastQCFastQC Report
Wed 8 May 2024
EGAF00002877316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1333800
Total Bases94.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43840.32868496026390764No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA36320.27230469335732493No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)