FastQCFastQC Report
Tue 7 May 2024
EGAF00002877324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32830
Total Bases2.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6782.0651842826682913No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2620.7980505635089856No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG670.20408163265306123No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA550.1675296984465428No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC530.16143770941212304No Hit
CTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAG450.13706975327444412No Hit
CTGTCCCCGCTGCTGGAGCTGCGCGCTAACGGGCTGCTGCCAACCTAAGT410.12488577520560462No Hit
TCCTAGATGAGGAAGTGAAGCTTATCAAGAAGATGGGTGACCACCTGACC410.12488577520560462No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG390.11879378617118488No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA390.11879378617118488No Hit
GACAGAAGGATGTAAAGGATGGAAAATACAGCCAGGTCCTAGCCAATGGT380.11574779165397502No Hit
GAAATTTAGGTGTAAATCAATACGTTCTACAGGGAAATAATGAGGCTAAG380.11574779165397502No Hit
ATAGAGGGCTGCGTCACTTCTGGGGCCTTCGTGTCCGAGGCCAGCACACC370.11270179713676516No Hit
GTAAGAGGTATCTCCATCAAGCTGCAGGAGGAGGAGAGAGAAAGGAGAGA360.10965580261955528No Hit
GAATAATCTGATGGTTCCTGAAATGACTGGGGAAGCAGACGCTTCGTATG340.10356381358513556No Hit
TAAATGCAGTCTTACTGGTTTGACAGCAATTTCATATATAATTATTGAGG340.10356381358513556No Hit
ACTTTATGTTTGTCTTTTAATGCTTCATTCAATATTGACATTTGTAGTTG340.10356381358513556No Hit
GTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCT330.10051781906792567No Hit
GTGCAGTATATTTTTCTAAGTTTTGGAAAGCAGGTTTTTTCCTTTAAAAA330.10051781906792567No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)