FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29610
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8052.7186761229314422No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1880.6349206349206349No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAA930.3140830800405268No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT630.2127659574468085No Hit
GAGGTGAACTTCCAGGAGTATGTCACCTTCCTGGGGGCCTTGGCTTTGATCTACAATGAAGCCCTCAAGGG500.16886187098953057No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG490.16548463356973994No Hit
CTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCAAATTGTCTTCTCCACGAGGTGGA340.11482607227288079No Hit
GATGAAACAGGAACTGGAAGCTGAATATTTGGCAATATTCAAGAAGACAGTTGCGATGCATGAAGTGTTCC340.11482607227288079No Hit
GGTTAAGCACGTTTTGGGGATAATTTTCTCTTCTTTAGGCAATGATTAAGTTAGGCAATTTCCAGTATGTT330.11144883485309016No Hit
CTCTAAACTTATGTGAACAGTTTTGAGTTTATGAATTCTAGAAACTAAAATCAAGAATACAGAAAAATGAA300.10131712259371835No Hit
TAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATT300.10131712259371835No Hit
GTATAGGATGGTGGATACTTACTATTAAGTTACTGCACAATTCCTAGAGGAAAACTGTAGATTTGTGTCTT300.10131712259371835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)