FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23946
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8223.4327236281633677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG640.26726801971101644No Hit
CTGTTGATGTGTGCGTCTGATTATTGCTTTTTTAATTTTATGAAAATTGTGTAAAATTACATTTTTTTTCC500.2088031403992316No Hit
GTATAATAGGAAATAATTCAAAATGAAGCAGATGAAGAGGGAAAAGGGGACAAAGAACATTTGAAACAAAT340.14198613547147748No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG310.12945794704752359No Hit
CCTGTAATCCCGGCTATTCGGGAGGCCGAGGCACAAGAATTGTTTCAACCCAGGAGGCAGAGGTTGCAGTG280.1169297586235697No Hit
GAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATAC260.10857763300760044No Hit
GTACATATATACTTGGTAATTATGAGCTTGATTTTGTTTTTGGAAATATGTGTTCATAATTTAGGTAATTT260.10857763300760044No Hit
GTATAACTGGAGTGCCAAGGCTAAAAGACGAAATACCACCGGAACTGGTCGAATGAGGCACCTAAAAATTG260.10857763300760044No Hit
CTCTAAGAGCCGAGATAGCTTCCTGAAACGTGTGAAGGAAAATGATCAGAAAAAGAAAGAAGCCAAAGAGA250.1044015701996158No Hit
GCTCTTGCTAAGCCAGTAGAAATGTCTAAAAGCAAAAGAAACGCTGGTATAAAAAAATTGCATTTGATTCA250.1044015701996158No Hit
CTATAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATATGTTATCTACATTGAACGGG240.10022550739163118No Hit
TAAATGCACCTTATATGTTTAAACAATCTTTGTATACTTTTGGGATTTTTGGTGCTTATATGCTAAATCAC240.10022550739163118No Hit
TCCCTCCTCTCTCTTAAAACAGTACTGTCATTCATTTCACTTATCTGTGTGCTATAATCATCCAAAATATT240.10022550739163118No Hit
CGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAAAA240.10022550739163118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)