FastQCFastQC Report
Wed 8 May 2024
EGAF00002877352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108904
Total Bases7.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23422.1505178873135975No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5490.5041137148314111No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA2050.1882391831337692No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)