FastQCFastQC Report
Tue 7 May 2024
EGAF00002877360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28591
Total Bases2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9553.3402119548109543No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1070.37424364310447344No Hit
CATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACC380.13290895736420552No Hit
CTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGCCGTCAGCACA330.115420936658389No Hit
GTTCTGGAAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCT300.1049281242348991No Hit
GTGAAAGATCTGTATACTAAAAAGTGTAAAACATTAATGGGAGAACTTGA290.1014305200937358No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)