FastQCFastQC Report
Wed 8 May 2024
EGAF00002877361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96913
Total Bases6.8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21822.2515039262018512No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6880.7099150784724444No Hit
GTTATTAACCAGACTCAGAAAGAAAACCTCAGGAAATTCTACAAGGGCAA1120.11556757091411886No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1000.1031853311733204No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)