FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21007
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7743.6844861236730613No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG530.2522968534298091No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG310.1475698576664921No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACC270.12852858570952538No Hit
GGATAAGATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTGCAA260.12376826772028371No Hit
GCCAGGCACTGGAGCTTAACAAATGCCAACGCCTTTGGTTTGATTTATTTTACTCCAGGCATCTTTTTTTT260.12376826772028371No Hit
TTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAA230.10948731375255867No Hit
TCCCAGGGACGGCCCAGCCCGTGAAGAGGAGCCTGGGCAAGGTGCCCAAGTGGCTGAAGCTGCCGGCCAGC230.10948731375255867No Hit
ATCTATAGCAAAGCAGAGAGAAGCTCAACAGCAGCAACTTCAAGCCCTAATAGCAGAAAAGAAAATGCAGC230.10948731375255867No Hit
ATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAA230.10948731375255867No Hit
CCTTAATTGCATTTTCTCTCTCTCACAGTGGCTGGCTAAGGAGTGCCTGCCTTCCCTGCTGATGCTGAAGT220.10472699576331698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)