FastQCFastQC Report
Wed 8 May 2024
EGAF00002877476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2103714
Total Bases149.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG194530.9246979389783974No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA138630.6589774085260639No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC26220.1246367139259424No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT22460.10676356196707348No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG21380.10162978427676005No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)