FastQCFastQC Report
Wed 8 May 2024
EGAF00002877509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3567875
Total Bases253.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA175640.49228182041130925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG94260.26419086991556595No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA89390.2505412885821392No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC56260.15768489647198963No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG44310.1241915706127597No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA36000.10090039589391445No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)