FastQCFastQC Report
Wed 8 May 2024
EGAF00002877558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1461116
Total Bases103.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA204391.3988622395484No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG146521.0027951237273427No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA142250.9735708869111008No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC55870.382378948694012No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA26800.18342143950240775No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT25120.17192337911568964No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC20920.14317822814889442No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG20780.14222005645000121No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCAT19850.13585505873592513No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA18230.12476764336301842No Hit
GTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCA17610.12052431155363434No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACC16360.111969207099231No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)