FastQCFastQC Report
Wed 8 May 2024
EGAF00002877657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144464
Total Bases10.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5170.3578746262044523No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4480.310111861778713No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT2820.1952043415660649No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG1860.12875179975634068No Hit
ACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACAT1450.10037102669177096No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)