FastQCFastQC Report
Thu 9 May 2024
EGAF00002877690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2623747
Total Bases186.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG106690.40663219433885966No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA55610.21194878926969712No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA40490.15432128173943602No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA37630.1434208405002464No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC32520.1239448773071489No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCAT28600.10900441239189602No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT27940.10648892595208302No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG26780.10206776796695717No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)