FastQCFastQC Report
Fri 10 May 2024
EGAF00002877700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2942915
Total Bases208.9 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA209970.7134762641802431No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG163450.5554017020539159No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA43220.1468611903503839No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)